PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00113.1_g00021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 306aa    MW: 33908.1 Da    PI: 9.4046
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00113.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.22e-33602011128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                              lp+G++F+P+d+e++  +L+ kv+++       ++++  +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r++
  Rsa1.0_00113.1_g00021.1  60 LPAGVKFDPSDQEVL-GHLEGKVRDDArklhplIDEFIrTIDGEnGICYTHPEKLP-GVSKDGTVRHFFHRPSKAYTTGTRKRRKV 143
                              799**********99.89******9996665442222223554445**********.666777899******************74 PP

                      NAM  79 k.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              +       + +W++tgk+++vl+ +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Rsa1.0_00113.1_g00021.1 144 HtdsevggETRWHKTGKTRPVLT-GGRVKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 201
                              43455555778************.9*************6658999************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.24E-3754220IPR003441NAC domain
PROSITE profilePS5100533.1960220IPR003441NAC domain
PfamPF023651.1E-1461201IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTWCNDSSDV QTVETIIIPS PTVVESPEAS FQVSCHKTCP SCGHKFKFHE QAGIHDLPGL  60
PAGVKFDPSD QEVLGHLEGK VRDDARKLHP LIDEFIRTID GENGICYTHP EKLPGVSKDG  120
TVRHFFHRPS KAYTTGTRKR RKVHTDSEVG GETRWHKTGK TRPVLTGGRV KGYKKILVLY  180
TNYGKQKKPE KTNWVMHQYH LGTNEEEKEG ELVVSKIFYQ TQPRQCGGSL AAAATEKERP  240
YLHGHHLGGG GTGSRHLYHK NGNVKGTGGG GSARASEYYN NIPAIISFNQ SGIQNHLVHG  300
TQPFIP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009137790.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotO494590.0NAC73_ARATH; NAC domain-containing protein 73
TrEMBLM4E5Z30.0M4E5Z3_BRARP; Uncharacterized protein
STRINGBra024197.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.10.0NAC domain containing protein 73